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The affair involving racist treatment of the 24-year-old footballer reportedly took place during Manchester City's 2-0 loss at Stamford Bridge on Saturday.
Mauricio Pochettino's men have amassed 36 points from 16 Premier League matches, with 12 wins, leaving them in third place behind Liverpool and Manchester City.
Guardiola still took pride in City's performance and urged his side to usurp Jurgen Klopp's men, who took a one-point lead in the title race with a 4-0 win at Bournemouth earlier on Saturday.
N'Golo Kante and David Luiz were on target for Maurizio Sarri's men as City paid for failing to take advantage of their first-half dominance.
Mourinho's comments appear to be aimed at Manchester City, who are the subject of an ongoing investigation by European football's governing body into alleged FFP breaches.
Jose Mourinho's team is now six points off the Champions League qualifying places and a massive 16 behind first-place Manchester City.
The result piles the pressure on second-place Liverpool ahead of its Merseyside derby against Everton on Sunday.
The new proposals say that, from 2020, clubs will only be allowed to have between six and eight players loaned out to other clubs.
Lyon must avoid defeat away to Shakhtar Donetsk in their final game to join City in the next round after the Ukrainians won 3-2 at Hoffenheim to keep alive their hopes of progressing from Group F.
With Chelsea stumbling, second-placed Liverpool remain the most likely challengers for City's title after sweeping to a 3-0 win at Watford that keeps them two points behind the leaders.