The court also issued notices to Kolkata Commissioner of Police West Bengal Chief Secretary.
The apex court, however, took into record apprehensions by Additional Solicitor General S V Raju against possible obstruction to the ED officers
Senior advocate Kapil Sibal, appearing for the petitioners, said they are not preventing investigation in the matter and the ED can come to Kolkata and conduct the probe.
ED's special public prosecutor Nitesh Rana told the court that the accused was not appearing before either the court or the probe agency despite several summons issued against her.
The rift over leadership in the ruling camp, which was put to rest for a short while earlier in the year, after the party supremo dissolved old committees to form new ones, reared its head again.
TMC will win 250 seats in next assembly polls if President rule imposed in Bengal: Abhishek Banerjee
Mamata Banerjee-led TMC had stormed to power for the third consecutive term in West Bengal, bagging 213 seats.
Banerjee and his wife have also urged that they be probed at Kolkata and granted exemption from personal appearance.
The petition filed through advocate Sunil Fernandes states that the high court has erroneously dismissed the writ petition.
Senior advocate Vikas Pahwa, appearing for the State of West Bengal, contended that the present notice was different from the ones issued earlier as now.
Banerjee's wife Rujira too had failed to appear at the ED office here on March 22 and she has now been asked to depose on Wednesday.
Banerjee's role and links with the other accused in the case are being investigated, ED officials had said.
BJP using central agencies to pursue vendetta politics, says TMC after ED grills Abhishek for 8 hours
TMC MP Abhishek Banerjee on Monday appeared before the Enforcement Directorate (ED) in New Delhi for questioning in a money laundering case linked to the alleged coal scam.
Trinamool MP Abhishek Banerjee appears before ED in Delhi; agency officials summoned by Kolkata Police
The 34-year-old Trinamool Congress (TMC) national general secretary was seen entering the new office of the central probe agency in central Delhi around 11 am.
Both Abhishek Banerjee, the nephew of West Bengal Chief Minister Mamata Banerjee, and his wife are scheduled to face the ED sleuths for interrogation in the national capital on March 21 and 22.
The Delhi High Court had on March 11 dismissed a plea by the couple challenging the summons that asked them to appear before the ED.