Younis claimed that the revolt was not carried out because the players were unhappy with his captaincy style or strong attitude.
Younis resigned a few days ago but neither him nor the Pakistan Cricket Board offered any explanation for it.
A source said that Younis wanted to join the team's bio-bubble few days later and that conversation with a board official led to him stepping down as batting coach.
The Pakistan team is due to start a tour of the UK from June 25 to July 20 for three ODIs and three T20Is.
Abid Ali broke Younis Khan's eight-year-old record of the highest score by a Pakistan batsman in Zimbabwe in the longest format of the game.
Younis Khan became the second Pakistan captain to win a major ICC event in 2009 and finished career as the most successful Test batsman.